Quantitative proteomic landscapes of primary and recurrent glioblastoma reveal a protumorigeneic role for FBXO2-dependent glioma-microenvironment interactions
Marcel Buehler#, Xiao Yi#, Weigang Ge, Peter Blattmann, Elisabeth Rushing, Guido Reifenberger, Joerg Felsberg, Charles Yeh, Jacob E. Corn, Luca Regli, Junyi Zhang, Ann Cloos,Vidhya Ravi, Benedikt Wiestler, Dieter Henrik Heiland, Ruedi Aebersold, Michael Weller, Tiannan Guo, Tobias Weiss*.
Neuro-Oncology. 2022. Accepted. 2022 Jul 8;noac169. doi: 10.1093/neuonc/noac169.
An in-library ligation strategy and its application in CRISPR/Cas9 screen of high-order gRNA combinations
Zhike Lu#, Ke Ni#, Yingying Wang#, Yangfan Zhou, Yini Li, Jianfeng Yan, Qingkai Song, Min Liu, Yujun Xu, Zhenxing Yu, Tiannan Guo, Lijia Ma*.
Nucleic Acids Research. 2022.50(11): 6575-6586.
High-throughput proteomic sample preparation using pressure cycling technology
Xue Cai#, Zhangzhi Xue, Chunlong Wu, Rui Sun, Liujia Qian, Liang Yue, Weigang Ge, Xiao Yi, Wei Liu, Chen Chen, Huanhuan Gao, Jing Yu, Luang Xu, Yi Zhu*, Tiannan Guo*.
Nature Protocols. 2022.17(10): 2307-2325.
Enhanced inflammation and suppressed adaptive immunity in COVID-19 with prolonged RNA shedding
Shaohua Tang# , Rui Sun# , Weigang Ge# , Tingting Mao# , Liujia Qian# , Chongquan Huang# , Zhouyang Kang# , Qi Xiao , Meng Luo , Qiushi Zhang , Sainan Li , Hao Chen , Wei Liu , Bingjie Wang , Shufei Li , Xiaoling Lin , Xueqin Xu , Huanzheng Li , Lianpeng Wu , Jianyi Dai , Huanhuan Gao , Lu Li , Tian Lu , Xiao Liang , Xue Cai , Guan Ruan , Fei Xu , Yan Li , Yi Zhu* , Ziqing Kong*, Jianping Huang *, Tiannan Guo*.
Cell Discovery. 2022.8(1): 70.
Proteotypic Differences of Follicular-Patterned Thyroid Neoplasms
Dongdong Huang#, Huifang Zhang, Lu Li, Weigang Ge, Wei Liu, Zhen Dong, Jinlong Gao, Nan Yao, Wenxin Fu, Lingling Huang, Tiannan Guo, Yaoting Sun* and Xiaodong Teng*.
Frontiers in Endocrinology. 2022.13: 854611.
Optimization of Microflow LC Coupled with Scanning SWATH and Its Application in Hepatocellular Carcinoma Tissues
Huanhuan Gao#, Youqi Liu, Vadim Demichev, Stephen Tate, Chen Chen, Jiang Zhu, Cong Lu, Markus Ralser, Tiannan Guo*, and Yi Zhu*.
Journal of Proteome Research. 2022.21(7): 1686-1693.
Molecular Subgroups of Intrahepatic Cholangiocarcinoma Discovered by Single-Cell RNA Sequencing-Assisted Multi-Omics Analysis
Xuanwen Bao#, Qiong Li#, Jinzhang Chen#, Diyu Chen#, Chanqi Ye#, Xiaomeng Dai, Yanfang Wang, Xin Li, Xiaoxiang Rong, Fei Cheng, Ming Jiang, Zheng Zhu, Yongfeng Ding, Rui Sun, Chuan Liu, Lingling Huang, Yuzhi Jin, Bin Li, Juan Lu, Wei Wu, Yixuan Guo, Wenguang Fu, Sarah Raye Langley, Vincent Tano, Weijia Fang, Tiannan Guo*, Jianpeng Sheng*, Peng Zhao*, and Jian Ruan*.
Cancer Immunology Research. 2022.10(7): 811-828.
Proteomic characterization of Omicron SARS-CoV-2 host response
Jianfeng Bao#, Rui Sun#, Jingwen Ai#, Liujia Qian#, Fang Liu#, Hongyu Wang#, Lingling Tan, Xue Cai, Yingqiu Shi, Xiao Liang, Weigang Ge, Jing Wu, Chen Chen, Wenhong Zhang*, Jinsong Huang* & Tiannan Guo*.
Cell Discovery. 2022.8(1): 46.
An open invitation to the Understudied Proteins Initiative
Georg Kustatscher*, Tom Collins, Anne-Claude Gingras, Tiannan Guo, Henning Hermjakob, Trey Ideker, Kathryn S. Lilley, Emma Lundberg, Edward M. Marcotte, Markus Ralser & Juri Rappsilber*.
Nature Biotechnology. 2022.40(6): 815-817.
Understudied proteins: opportunities and challenges for functional proteomics
Georg Kustatscher*, Tom Collins, Anne-Claude Gingras, Tiannan Guo, Henning Hermjakob, Trey Ideker, Kathryn S. Lilley, Emma Lundberg, Edward M. Marcotte, Markus Ralser & Juri Rappsilber*.
Nature Methods. 2022.19(7): 774-779.
RAB2A promotes cervical cancer progression as revealed by comprehensive analysis of HPV integration and proteome in longitudinal cervical samples
Yifan Meng*#; Shitong Lin#; Yi Zhou#; Xiao Yi#; Ping Wu; Qing Zhang; Weigang Ge; Canhui Cao; Peipei Gao; Wenhua Zhi; Ting Peng; Juncheng Wei; Wencheng Ding; Ding Ma; Guoliang Li; Qin Yang*; Tiannan Guo*; Xi Zeng*; Peng Wu*.
Clinical and Translational Medicine. 2022.12(3): e767.
Multi-omics in COVID-19: Seeing the unseen but overlooked in the clinic
Tian Lu#, Yingrui Wang, Tiannan Guo*.
Cell Reports Medicine. 2022.3(3): 100580.
Stratification of follicular thyroid tumours using data-independent acquisition proteomics and a comprehensive thyroid tissue spectral library
Yaoting Sun*, Lu Li, Yan Zhou, Weigang Ge, He Wang, Runxin Wu, Wei Liu, Hao Chen, Qi Xiao, Xue Cai, Zhen Dong, Fangfei Zhang, Junhong Xiao, Guangzhi Wang, Yi He, Jinlong Gao, Oi Lian Kon, Narayanan Gopalakrishna Iyer, Haixia Guan, Xiaodong Teng, Yi Zhu*, Yongfu Zhao*, Tiannan Guo*.
Molecular Oncology. 2022.16(8): 1611-1624.
Circulating proteome and progression of type 2 diabetes
Wanglong Gou#, Liang Yue#, Xinyi Tang#, Yanyan Wu#, Xue Cai#, Menglei Shuai, Zelei Miao, Yuanqing Fu, Hao Chen, Zengliang Jiang, Jiali Wang, Yunyi Tian, Congmei Xiao, Nan Xiang, Zhen Wu, Yuming Chen*, Tiannan Guo*, JuSheng Zheng*.
The Journal of Clinical Endocrinology & Metabolism. 2022.107(6): 1616–1625.
sRAGE alleviates SARS-CoV-2-induced pneumonia in hamster
Xiuqin Zhang, Dan Li, Rui Sun, Xinli Hu, Zhiqi Song, Xiaotian Ni, Hua Zhu, Tiannan Guo*, Chuan Qin*, Ruiping Xiao*.
Signal Transduction and Targeted Therapy. 2022.7(1): 36.
PROTREC: A probability-based approach for recovering missing proteins based on biological networks
Weijia Kong, Bertrand Jern, Han Wong, Huanhuan Gao, Tiannan Guo, Xianming Liu, Xiaoxian Du, Limsoon Wong*, Wilson Wen Bin Goh*.
Journal of Proteomics. 2022.250: 104392.
DIA-based Proteomics Identifies IDH2 as a Targetable Regulator of Acquired Drug Resistance in Chronic Myeloid Leukemia
Wei Liu#, Yaoting Sun, Weigang Ge, Fangfei Zhang, Lin Gan, Yi Zhu, Tiannan Guo*, Kexin Liu*.
Molecular & Cellular Proteomics. 2022.21(2): 100187
Proteomic datasets of HeLa and SiHa cell lines acquired by DDA-PASEF and diaPASEF
Zelu Huang, Weijia Kong, Bertrand Jernhan Wong, Huanhuan Gao, Tiannan Guo, Xianming Liu, Xiaoxian Du, Limsoon Wong*, Wilson Wen Bin Goh*.
Journal of Proteomics. 2022.41: 107919.
Proteomic and metabolomic profiling of urine uncovers immune responses in patients with COVID-19
Xiaojie Bi#, Wei Liu#, Xuan Ding#, Shuang Liang#, Yufen Zheng#, Xiaoli Zhu#, Sheng Quan#, Xiao Yi, Nan Xiang, Juping Du, Haiyan Lyu, Die Yu, Chao Zhang Luang Xu, Weigang Ge, Jiale He, Guangjun Zhu, Donglian Wang, Hongguo Zhu, Shiyong Chen, Jun Li, Haihong Zhao, Yi Zhu*, Huafen Liu*, Jiaqin Xu*, Bo Shen*, Tiannan Guo*.
Cell Reports. 2022.38(3): 110271
Proteomics profiling of colorectal cancer progression identifies PLOD2 as a potential therapeutic target
Yingkuan Shao#, Kailun Xu#, Xi Zheng, Biting Zhou, Xiuli Zhang, Lin Wang, Yaoting Sun, Dan Li, Ting Chen, Jian Wang, Shaojun Yu, Lifeng Sun, Xiaoming Xu, Shaozhi Dai, Huanhuan Gao, Guan Ruan, Wei Liu, Xue Cai, Tiansheng Zhu, Lina Qi, Jiani Chen, Wangxiong Hu, Xingyue Weng, Yi Zhu, Xueping Xiang, Zhiyuan Hu, Jinfan Li, Lirong Chen, Jimin Shao*, Shu Zheng*, Tiannan Guo*.
Cancer Commun. 2022.42(2): 164-169.
A prostate cancer tissue specific spectral library for targeted proteomic analysis
Rui Sun, Mengge Lyu, Shuang Liang, Weigang Ge, Yingrui Wang, Xuan Ding, Cheng Zhang, Yan Zhou, Shanjun Chen, Lirong Chen, Tiannan Guo*.
Proteomics. 2022.22(7): e2100147.
Potential Use of Serum Proteomics for Monitoring COVID-19 Progression to Complement RT-PCR Detection
Ying Zhang#, Xue Cai#, Weigang Ge#, Donglian Wang#, Guangjun Zhu#, Liujia Qian#, Nan Xiang, Liang Yue, Shuang Liang, Fangfei Zhang, Jing Wang, Kai Zhou, Yufen Zheng, Minjie Lin,Tong Sun, Ruyue Lu, Chao Zhang, Luang Xu, Yaoting Sun, Xiaoxu Zhou, Jing Yu, Lyv Mengge , Zhu Bo Shen, Xu Hongguo*, Jiaqin Xu*, Yi Zhu*, Tiannan Guo*.
Journal of Proteome Research. 2022.21(1): 90-100.
Novel deep learning radiomics model for preoperative evaluation of hepatocellular carcinoma differentiation based on computed tomography data
Yong Ding#, Shijian Ruan#, Yubizhuo Wang#, Jiayuan Shao#, Rui Sun, Wuwei Tian, Nan Xiang, Weigang Ge, Xiuming Zhang, Kunkai Su, Jingwen Xia, Qiang Huang, Weihai Liu, Qinxue Sun, Haibo Dong*, Mylène C.Q. Farias, Tiannan Guo*, Andrey S. Krylov, Wenjie Liang*, Wenbo Xiao, Xueli Bai, Tingbo Liang*.
Clinical Translation Medicine. 2021.11(11): e570.
Computational Optimization of Spectral Library Size Improves DIA-MS Proteome Coverage and Applications to 15 Tumors
Weigang Ge#, Xiao Liang #, Fangfei Zhang#, Yifan Hu#, Luang Xu, Nan Xiang, Rui Sun, Wei Liu, Zhangzhi Xue, Xiao Yi, Yaoting Sun, Bo Wang, Jiang Zhu, Cong Lu, Xiaolu Zhan, Lirong Chen, Yan Wu, Zhiguo Zheng, Wangang Gong, Qijun Wu, Jiekai Yu, Zhaoming Ye, Xiaodong Teng, Shiang Huang, Shu Zheng, Tong Liu*, Chunhui Yuan*, Tiannan Guo*.
Journal of Proteome Research. 2021.20(12): 5392-5401.
SnapShot: Clinical proteomics
Yi Zhu, Ruedi Aebersold, Matthias Mann, Tiannan Guo.
Cell. 2021.184(18): 4840-4840.
Gut microbiota, inflammation, and molecular signatures of host response to infection
Wanglong Gou#, Yuanqing Fu#, Liang Yue#, Geng-dong Chen#, Xue Cai#, Menglei Shuai#, Fengzhe Xu#, Xiao Yi, Hao Chen, Yi Zhu, Mian-li Xiao, Zengliang Jiang, Zelei Miao, Congmei Xiao, Bo Shen, Xiaomai Wu, Haihong Zhao, Wenhua Ling, Jun Wang*, Yu-ming Chen*, Tiannan Guo*, Ju-Sheng Zheng*.
Journal of Genetics and Genomics. 2021.48(9): 792-802.
Phenotypic characterization of two novel cell line models of castration resistant prostate cancer
Michael C. Haffner*, Akshay Bhamidipati, Harrison K. Tsai, David M. Esopi*, Ajay M. Vaghasia, Jin-Yih Low, Radhika A. Patel, Tam Pham, Nicole Castagna, Jessica Hicks, Nicolas Wyhs, Rudolf Aebersold, Angelo M. De Marzo, William G. Nelson, Tiannan Guo and Srinivasan Yegnasubramanian*.
The Prostate. 2021.81(15): 1159-1171.
METTL9 mediated N1-histidine methylation of zinc transporters is required for tumor growth
Mengyue Lv#, Dan Cao#*, Liwen Zhang, Chi Hu, Shukai Li, Panrui Zhang, Lianbang Zhu, Xiao Yi, Chaoliang Li, Alin Yang, Zhentao Yang, Yi Zhu, Kaiguang Zhang & Wen Pan*.
Protein & Cell. 2021.12(12): 965-970.
On the feasibility of deep learning applications using raw mass spectrometry data
Joris Cadow*, Matteo Manica, Roland Mathis, Tiannan Guo, Ruedi Aebersold and María Rodríguez Martínez*.
Bioinformatics. 2021.37(Suppl_1): i245-i253.
High-Throughput Proteomics and AI for Cancer Biomarker Discovery
Qi Xiao#, Fangfei Zhang, Luang Xu, Liang Yue, Oi Lian Kon, Yi Zhu*, Tiannan Guo*.
Advanced Drug Delivery Reviews. 2021.176: 113844.
Eleven routine clinical features predict COVID-19 severity uncovered by machine learning of longitudinal measurements
Kai Zhou#, Yaoting Sun#, Lu Li#, Zelin Zang#, Jing Wang#, Jun Li#, Junbo Liang#, Fangfei Zhang, Qiushi Zhang, Weigang Ge, Hao Chen, Xindong Sun, Liang Yue, Xiaomai Wu, Bo Shen, Jiaqin Xu, Hongguo Zhu, Shiyong Chen, Hai Yang, Shigao Huang, Minfei Peng, Dongqing Lv, Chao Zhang, Haihong Zhao, Luxiao Hong, Zhehan Zhou, Haixiao Chen, Xuejun Dong, Chunyu Tu, Minghui Li, Yi Zhu*, Baofu Chen*, Stan Z. Li*, Tiannan Guo*.
Computational and Structural Biotechnology Journal. 2021.19: 3640-3649.
The Hippo-TAZ axis mediate vascular endothelial growth factor C in glioblastoma-derived exosomes to promote angiogenesis
Zhengmin Wang#, Yifan Yuan#, Xiong Ji#, Xing Xia#, Zhujun Li, Xiao Yi, Yi Zhu, Tiannan Guo, Yin Wang, Liang Chen*, Ying Liu*.
Cancer Letters. 2021.513: 1-13.
Immunometabolism the CyTOF way
Liujia Qian, Tiannan Guo*.
Immunity. 2021.54(4): 610-613.
Multi-organ Proteomic Landscape of COVID-19 Autopsies
Xiu Nie#, Liujia Qian#, Rui Sun#, Bo Huang#, Xiaochuan Dong#, Qi Xiao#, Qiushi Zhang#, Tian Lu, Liang Yue, Shuo Chen, Xiang Li, Yaoting Sun, Li Lu, Luang Xu, Li Yan, Ming Yang, Zhangzhi Xue, Shuang Liang, Xuan Ding, Chunhui Yuan, Li Peng, Wei Liu, Xiao Yi, Mengge Lyu, Guixiang Xiao, Xia Xu, Weigang Ge, Jiale He, Jun Fan, Junhua Wu, Meng Luo, Xiaona Chang, Huaxiong Pan, Xue Cai, Junjie Zhou, Jing Yu, Huanhuan Gao, Mingxing Xie, Sihua Wang, Guan Ruan, Hao Chen, Hua Su, Heng Mei, Danju Luo, Dashi Zhao, Fei Xu, Yan Li, Yi Zhu*, Jiahong Xia*, Yu Hu*, Tiannan Guo*.
Cell. 2021.184(3): 775-791.e14.
Proteomic and metabolomic investigation of serum lactate dehydrogenase elevation in COVID-19 patients
Haixi Yan#, Xiao Liang#, Juping Du#, Zebao He#, Yu Wang, Mengge Lyu ,Liang Yue, Fangfei Zhang, Zhangzhi Xue, Luang Xu, Guan Ruan, Jun Li, Hongguo Zhu, Jiaqin Xu, Shiyong Chen, Chao Zhang, Dongqing Lv ,Zongmei Lin, Bo Shen, Yi Zhu*, Biyun Qian*, Haixiao Chen*, Tiannan Guo*.
Proteomics. 2021.21(15): e2100002.
ProteomeExpert: A Docker image based web-server for exploring, modeling, vis-ualizing, and mining quantitative proteomic data sets
Tiansheng Zhu#, Hao Chen, Xishan Yan, Zhicheng Wu, Xiaoxu Zhou, Qi Xiao, Weigang Ge, Qiushi Zhang, Chao Xu, Luang Xu, Guan Ruan, Zhangzhi Xue, Chunhui Yuan*, Guo-Bo Chen* and Tiannan Guo*.
Bioinformatics. 2021.37(2): 273-275.
BatchServer: a web server for batch effect evaluation, visualization and correction
Tiansheng Zhu, Rui Sun, Fangfei Zhang, Guo-Bo Chen, Xiao Yi, Guan Ruan, Chunhui Yuan, Shuigeng Zhou*, Tiannan Guo*.
Journal of Proteome Research. 2021.20(1): 1079-1086.
Convergent network effects along the axis of gene expression during prostate cancer progression
Konstantina Charmpi#, Tiannan Guo*#, Qing Zhong#, Ulrich Wagner#, Rui Sun, Nora C Toussaint, Christine Fritz, Chunhui Yuan, Hao Chen, Niels J Rupp, Ailsa Christiansen, Dorothea Rutishauser, Jan H Ruschoff, Christian Fankhauser, Karim Saba, Cedric Poyet, Thomas Hermanns, Kathrin Oehl, Ariane Leoni Moore, Christian Beisel, Laurence Calzone, Loredana Martignetti, Qiushi Zhang, View ORCID Profile Yi Judy Zhu, Maria Rodriguez Martinez, Matteo Manica, Michael C Haffner, Ruedi Aebersold*, Peter J Wild*, Andreas Beyer*.
Genome Biology. 2020.21(1): 302.
Phenotype Classification using Proteome Data in a Data-Independent Acquisition Tensor Format
Fangfei Zhang#, Shaoyang Yu#, Lirong Wu#, Zelin Zang, Xiao Yi, Jiang Zhu, Cong Lu, Ping Sun, Yaoting Sun, Sathiyamoorthy Selvarajan, Lirong Chen, Xiaodong Teng, Yongfu Zhao, Guangzhi Wang, Junhong Xiao, Shiang Huang, Oi Lian Kon, Gopalakrishna N. Iyer, Stan Z. Li*, Zhongzhi Luan*, Tiannan Guo*.
Journal of American Society of Mass Spectrometry. 2020.31(11): 2296-2304.
PulseDIA: Data-Independent Acquisition Mass Spectrometry Using Multi-Injection Pulsed Gas-Phase Fractionation
Cai, Xue#; Ge, Weigang#; Yi, Xiao; Sun, Rui; Zhu, Jiang; Lu, Cong; Sun, Ping; Zhu, Tiansheng; Ruan, Guan; Yuan, Chunhui; Liang, Shuang; Lyu, Mengge; Huang, Shiang; Zhu, Yi*; Guo, Tiannan*.
Journal of Proteome Research. 2021.20(1): 279-288.
Generating Proteomic Big Data for Precision Medicine
Liang Yue#, Fangfei Zhang#, Rui Sun, Yaoting Sun, Chunhui Yuan, Yi Zhu, Tiannan Guo*.
Proteomics. 2020.20(21-22): e1900358.
DPHL: A DIA pan-human protein mass spectrometry library for robust biomarker discovery
Tiansheng Zhu#, Yi Zhu#*, Yue Xuan#, Huanhuan Gao, Xue Cai, Sander R. Piersma, Thang V. Pham, Tim Schelfhorst, Richard R.D.G. Haas, Irene Bijnsdorp, Rui Sun, Liang Yue, Guan Ruan, Qiushi Zhang, Mo Hu, Yue Zhou, Winan J. Van Houdt, T.Y.S Lelarge, J. Cloos, Anna Wojtuszkiewicz, Danijela Koppers-Lalic, F. Böttger, Chantal Scheepbouwer, R.H Brakenhoff, G.J.L.H. van Leenders, Jan N.M. Ijzermans, J.W.M. Martens, R.D.M. Steenbergen, N.C. Grieken, Sathiyamoorthy Selvarajan, Sangeeta Mantoo, Sze Sing Lee, Serene Jie Yi Yeow, Syed Muhammad Fahmy Alkaff, Nan Xiang, Yaoting Sun, Xiao Yi, Shaozheng Dai, Wei Liu, Tian Lu, Zhicheng Wu, Xiao Liang, Man Wang, Yingkuan Shao, Xi Zheng, Kailun Xu, Qin Yang, Yifan Meng, Cong Lu, Jiang Zhu, Jin’e Zheng, Bo Wang, Sai Lou, Yibei Dai, Chao Xu, Chenhuan Yu, Huazhong Ying, Tony Kiat-hon Lim, Jianmin Wu, Xiaofei Gao, Zhongzhi Luan, Xiaodong Teng, Peng Wu, Shi’ang Huang, Zhihua Tao, N. Gopalakrishna Iyer, Shuigeng Zhou, Wenguang Shao, Henry Lam, Ding Ma, Jiafu Ji , Oi Lian Kon, Shu Zheng, Ruedi Aebersold, Connie R. Jimenez, Tiannan Guo*.
Genomics, Proteomics & Bioinformatics. 2020.18(2): 104-119.
Proteomic and Metabolomic Characterization of COVID-19 Patient Sera
Bo Shen #, Xiao Yi #, Yaoting Sun #, Xiaojie Bi #, Juping Du #, Chao Zhang #, Sheng Quan #, Fangfei Zhang, Rui Sun, Liujia Qian, Weigang Ge, Wei Liu, Shuang Liang, Hao Chen, Ying Zhang, Jun Li, Jiaqin Xu, Zebao He, Baofu Chen, Jing Wang, Haixi Yan, Yufen Zheng, Donglian Wang, Jiansheng Zhu, Ziqing Kong, Zhouyang Kang, Xiao Liang, Xuan Ding, Guan Ruan, Nan Xiang, Xue Cai, Huanhuan Gao, Lu Li, Sainan Li, Qi Xiao, Tian Lu, Yi Zhu*, Huafen Liu*, Haixiao Chen*, Tiannan Guo*.
Cell. 2020.182(1): 59-72.
Data-Independent Acquisition Mass Spectrometry and Software Tools: a Glimpse in 2020
Fangfei Zhang#, Weigang Ge, Guan Ruan, Xue Cai, Tiannan Guo*.
Proteomics. 2020.20(17-18): 1900276.
A circulating extracellular vesicles-based novel screening tool for colorectal cancer revealed by shotgun and data-independent acquisition mass spectrometry
Xi Zheng#, Kailun Xu#, Biting Zhou#, Ting Chen, Yanqin Huang, Qilong Li, Fei Wen, Weiting Ge, Jian Wang, Shaojun Yu, Liang Zhu, Liang Yue, Xue Cai, Qiushi Zhang, Guan Ruan, Tiansheng Zhu, Zhicheng Wu, Yi Zhu, Yingkuan Shao*, Tiannan Guo*, Shu Zheng*.
Journal of Extracellular Vesicles. 2020.9(1): 1750202.
Accelerated Lysis and Proteolytic Digestion of Biopsy-level Fresh Frozen and FFPE Tissue Samples Using Pressure Cycling Technology
Gao, Huanhuan#; Zhang, Fangfei; Liang, Shuang; Zhang, Qiushi; Lyu, Mengge; Qian, Liujia; Liu, Wei; Ge, Weigang; Chen, Chen; Yi, Xiao; Zhu, Jiang; Lu, Cong; Sun, Ping; Liu, Kexing; Zhu, Yi *; Guo, Tiannan *.
Journal of Proteome Research. 2020.19 (5): 1982-1990.
Accelerated Protein Biomarker Discovery from FFPE Tissue Samples using Single-shot, Short Gradient Microflow SWATH MS
Rui Sun#, Christie Hunter*#, Chen Chen, Weigang Ge, Nick Morrice, Qiushi Zhang, Xue Cai, Bo Wang, Xiaoyan Yu, Xiaodong Teng, Lirong Chen, Shaozheng Dai, Jian Song, Zhongzhi Luan, Changbin Yu, Ruedi Aebersold, Yi Zhu*, Tiannan Guo*.
Journal of Proteome Research. 2020.19(7): 2732- 2741.
Quantitative proteome landscape of the NCI-60 cancer cell lines
Tiannan Guo*#, Augustin Luna#, Vinodh Rajapakse#, Ching Chiek Koh#, Zhicheng Wu, Wei Liu, Yaoting Sun, Huanhuan Gao, Michael Patrick Menden, Chao Xu, Laurence Calzone, Loredana Martignetti, Chiara Auwerx, Marija Buljan, Amir Banaei-Esfahani, Alessandro Ori, Murat Iskar, Ludovic Gillet, Ran Bi, Jiangnan Zhang, Huanhuan Zhang, Chenhuan Yu, Qing Zhong, Sudhir Varma, Uwe Schmitt, Peng Qiu, Qiushi Zhang, Yi Zhu, Peter J. Wild, Mathew J. Garnett, Peer Bork, Martin Beck, Kexin Liu, Julio Saez-Rodriguez, Fathi Elloumi, William C. Reinhold, Chris Sander, Yves Pommier*, Ruedi Aebersold*.
iScience. 2019.21: 664-680.
Arabidopsis Proteome and the Mass Spectral Assay Library
Huoming Zhang*#, Pei Liu#, Tiannan Guo#, Huayan Zhao, Dalila Bensaddek, Ruedi Aebersold, Liming Xiong.
Scientific Data. 2019.6(1): 278.
High-throughput Proteomics analysis of FFPE tissue samples facilitates tumor stratification
Yi Zhu#, Tobias Weiss#, Qiushi Zhang, Rui Sun, Bo Wang, Xiao Yi, Zhicheng Wu, Huanhuan Gao, Xue Cai, Guan Ruan, Tiansheng Zhu, Chao Xu, Sai Lou, Xiaoyan Yu, Ludovic Gillet, Peter Blattmann, Karim Saba, Christian D. Fankhauser, Michael B. Schmid, Dorothea Rutishauser, Jelena Ljubicic, Ailsa Christiansen, Christine Fritz, Niels J. Rupp, Cedric Poyet, Elisabeth Rushing, Michael Weller, Patrick Roth, Eugenia Haralambieva, Silvia Hofer, Chen Chen, Wolfram Jochum, Xiaofei Gao, Lirong Chen, Qing Zhong, Peter J. Wild*, Ruedi Aebersold*, Tiannan Guo*.
Molecular Oncology. 2019.13(11): 2305-2328.
Proteomic investigation of intra-tumor heterogeneity using network-based contextualization — A case study on prostate cancer
Goh, Wilson*#; Zhao, Yaxing#; Sue, Andrew; Guo, Tiannan; Wong, Limsoon*.
Journal of Proteomics. 2019.206: 103446.
