Proteomic Identification of Small Extracellular Vesicle Proteins LAMB1 and Histone H4 for Prostate Cancer Diagnosis and Risk Stratification
Bairen Pang, Qi Wang, Haotian Chen, Zhihan Liu, Meng Han, Jie Gong, Liang Yue, Xuan Ding, Suying Wang, Zejun Yan, Yingzhi Chen, David Malouf, Joseph Bucci, Tiannan Guo, Cheng Zhou,* Junhui Jiang,* and Yong Li*
Advanced Science. 08 April 2024
Plasma and urine proteomics and gut microbiota analysis reveal potential factors affecting COVID-19 vaccination response
Changjiang Hu#, Weichao Hu#, Bo Tang#, Qiyu Bao#, Xingyu Jiang#, Li Tang, He Wang, Lijiao He, Moyang Lv, Yufeng Xiao, Cheng Liu, Xinzhe Li, Yunyi Liu, Jie Li, Guiping Huang, Zhen Dong*, Zhongjun Li*, Tiannan Guo* and Shiming Yang*
iScience. 2024. 27: 108851.
Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities
Yi-Zhou Jiang#, Ding Ma#, Xi Jin#, Yi Xiao#, Ying Yu#, Jinxiu Shi#, Yi-Fan Zhou, Tong Fu, Cai-Jin Lin, Lei-Jie Dai, Cheng-Lin Liu, Shen Zhao, Guan-Hua Su, Wanwan Hou, Yaqing Liu, Qingwang Chen, Jingcheng Yang, Naixin Zhang, Wen-Juan Zhang, Wei Liu, Weigang Ge, Wen-Tao Yang, Chao You, Yajia Gu, Virginia Kaklamani, François Bertucci, Claire Verschraegen, Anneleen Daemen, Nakul M. Shah, Ting Wang, Tiannan Guo, Leming Shi, Charles M. Perou, Yuanting Zheng*, Wei Huang* & Zhi-Ming Shao*
Nature Cancer. 12 February 2024
The 2023 Report on the Proteome from the HUPO Human Proteome Project
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra Orchard, Michael H A Roehrl, Edouard Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch.
Journal of Proteome Research. 2024 Jan 17. doi: 10.1021/acs.jproteome.3c00591. Epub ahead of print. PMID: 38232391.
In-depth metaproteomics analysis of tongue coating for gastric cancer: a multicenter diagnostic research study
Jiahui Chen#, Yingying Sun#, Jie Li#, Mengge Lyu#, Li Yuan#, Jiancheng Sun, Shangqi Chen, Can Hu, Qing Wei, Zhiyuan Xu*, Tiannan Guo*, Xiangdong Cheng*.
Microbiome. 2024 Jan 8;12(1):6. doi: 10.1186/s40168-023-01730-8.
Proteomic profiling of ovarian clear cell carcinomas identifies prognostic biomarkers for chemotherapy
Liang Yue, Tingting Gong, Wenhao Jiang, Liujia Qian, Wangang Gong, Yaoting Sun, Xue Cai, Heli Xu, Fanghua Liu, He Wang, Sainan Li, Yi Zhu, Zhiguo Zheng*, Qijun Wu*, Tiannan Guo*.
Proteomics. 2024 Jan 3:e2300242. doi: 10.1002/pmic.202300242.
Alzheimer’s disease early diagnostic and staging biomarkers revealed by large-scale cerebrospinal fluid and serum proteomic profiling
Qing-Qing Tao#, Xue Cai#, Yan-Yan Xue#, Weigang Ge#, Liang Yue, Xiao-Yan Li, Rong-rong Lin, Guo-Ping Peng, Wenhao Jiang, Sainan Li, Kun-Mu Zheng, Bin Jiang, Jian-Ping Jia*, Tiannan Guo*, Zhi-Ying Wu*.
The Innovation. 2024 Jan 2.
Risk stratification of papillary thyroid cancers using multidimensional machine learning
Li, Yuanhui#; Wu, Fan#; Ge, Weigang#; Zhang, Yu #; Hu, Yifan; Zhao, Lingqian; Gou, Wanglong; Shi, Jingjing; Ni, Yeqin; Li, Lu; Fu, Wenxin; Lin, Xiangfeng; Yu, Yunxian; Han, Zhijiang; Chen, Chuanghua; Xu, Rujun; Zhang, Shirong; Zhou, Li; Pan, Gang; Peng, You; Mao, Linlin; Zhou, Tianhan; Zheng, Jusheng; Zheng, Haitao*; Sun, Yaoting*; Guo, Tiannan*; Luo, Dingcun*
International Journal of Surgery. 110(1):p 372-384
Intestinal SURF4 is essential for apolipoprotein transport and lipoprotein secretion
Chun-Guang Guo#, Rui Sun#, Xiao Wang, Ye Yuan, Yan Xu, Shihan Li, Xueting Sun, Jue Wang, Xinli Hu, Tiannan Guo, Xiao-Wei Chen*, Rui-Ping Xiao*, Xiuqin Zhang*
Molecular Metabolism. 2023 Nov 30;79:101847. doi: 10.1016/j.molmet.2023.101847.
MultiPro: DDA-PASEF and diaPASEF acquired cell line proteomic datasets with deliberate batch effects
He Wang#, Kai Peng Lim#, Weijia Kong#, Huanhuan Gao, Bertrand Jern Han Wong, Ser Xian Phua, Tiannan Guo & Wilson Wen Bin Goh*
Scientific Data. (2023) 10:858
Proteomic-based stratification of intermediate-risk prostate cancer patients
Qing Zhong#, Rui Sun#, Adel T Aref# , Zainab Noor#, Asim Anees#, Yi Zhu, Natasha Lucas,Rebecca C Poulos, Mengge Lyu, Tiansheng Zhu, Guo-Bo Chen , Yingrui Wang, Xuan Ding, Dorothea Rutishauser, Niels J Rupp, Jan H Rueschoff, Cédric Poyet, Thomas Hermanns, Christian Fankhauser, María Rodríguez Martínez, Wenguang Shao, Marija Buljan, Janis Frederick Neumann, Andreas Beyer, Peter G Hains, Roger R Reddel , Phillip J Robinson, Ruedi Aebersold*, Tiannan Guo*, Peter J Wild*
Life Science Alliance. 4 December 2023. DOI: 10.26508/lsa.202302146
Multitissue Circadian Proteome Atlas of WT and Per1-/-/Per2-/- mice
Liujia Qian#, Yue Gu#, Qiaocheng Zhai#, Zhangzhi Xue#, Youqi Liu, Sainan Li, Yizhun Zeng, Rui Sun, Qiushi Zhang, Xue Cai, Weigang Ge, Zhen Dong, Huanhuan Gao, Yan Zhou, Yi Zhu*, Ying Xu*, Tiannan Guo*
Mol Cell Proteomics. 2023.22(12): 100675.
Immunotherapy targeting isoDGR-protein damage extends lifespan in a mouse model of protein deamidation
Pazhanichamy Kalailingam, Khalilatul-Hanisah Mohd-Kahliab, SoFong Cam Ngan, Ranjith Iyappan, Evelin Melekh, Tian Lu, Gan Wei Zien, Bhargy Sharma, Tiannan Guo, Adam J MacNeil, Rebecca EK MacPherson, Evangelia Litsa Tsiani, Deborah D O’Leary, Kah Leong Lim, I Hsin Su, Yong-Gui Gao, A Mark Richards, Raj N Kalaria, Christopher P Chen, Neil E McCarthy & Siu Kwan Sze
EMBO Molecular Medicine. (2023) e18526
Proteome-wide profiling reveals dysregulated molecular features and accelerated aging in osteoporosis: A 9.8-year prospective study
Jinjian Xu#, Xue Cai#, Zelei Miao#, Yan Yan#, Danyu Chen, Zhen-xiao Yang, Liang Yue, Wei Hu, Laibao Zhuo, Jia-ting Wang, Zhangzhi Xue, Yuanqing Fu, Ying Xu, Ju-Sheng Zheng*, Tiannan Guo*, Yu-ming Chen*
Aging Cell. 2023;00:e14035.
A pathway activity-based proteomic classifier stratifies prostate tumors into two subtypes
Rui Sun*#, Lingling Tan#, Xuan Ding, Jun A, Zhangzhi Xue, Xue Cai, Sainan Li and Tiannan Guo*
Clinical Proteomics. (2023) 20:50
Forager-farmer transition at the crossroads of East and Southeast Asia 4900 years ago
Minmin Ma#, Minxia Lu#, Rui Sun#, Zhonghua Zhu#, Dorian Q. Fuller, Jianxin Guo, Guanglin He, Xiaomin Yang, Lingling Tan, Yongxiu Lu, Jiajia Dong, Ruiliang Liu, Jishuai Yang, Bo Li, Tiannan Guo, Xiaorui Li, Dongyue Zhao, Ying Zhang, Chuan-Chao Wang*, Guanghui Dong*
Science Bulletin. October 16, 2023. doi.org/10.1016/j.scib.2023.10.015
Population serum proteomics uncovers a prognostic protein classifier for metabolic syndrome
Xue Cai#, Zhangzhi Xue#, Fang-Fang Zeng#, Jun Tang#, Liang Yue#, Bo Wang#, Weigang Ge, Yuting Xie, Zelei Miao, Wanglong Gou, Yuanqing Fu, Sainan Li, Jinlong Gao, Menglei Shuai, Ke Zhang, Fengzhe Xu, Yunyi Tian, Nan Xiang, Yan Zhou, Peng-Fei Shan, Yi Zhu*, Yu-ming Chen*, Ju-Sheng Zheng*, Tiannan Guo*
Cell Reports Medicine. 2023. 4: 101172.
Longitudinal Serum Proteomics Characterization of CD19-CAR-T Cell Therapy for B-Cell Malignancies
Youming Wang#, Rui Sun#, Weigang Ge, Lei Xue, Qianwen Xu, Hui Xu, Sujun Li, Miaomiao Wu, Tiannan Guo*, Xingbing Wang*
Journal of Proteome Research. August 2, 2023. DOI: 10.1021/acs.jproteome.3c00322
A Comparative Analysis of Data Analysis Tools for Data-Independent Acquisition Mass Spectrometry
Fangfei Zhang*, Weigang Ge, Lingling Huang, Dan Li, Lijuan Liu, Zhen Dong, Luang Xu, Xuan Ding, Cheng Zhang, Yingying Sun, Jun A, Jinlong Gao, Tiannan Guo*
Mol Cell Proteomics. 21 July 2023. doi.org/10.1016/j.mcpro.2023.100623
Identifying patients with rapid progression from hormone-sensitive to castration-resistant prostate cancer: a retrospective study
Chenxi Pan#, Yi He#, He Wang#, Yang Yu#, Lu Li, Lingling Huang, Mengge Lyu, Weigang Ge, Tiannan Guo, Bo Yang*, Yaoting Sun*, Zhiyu Liu*
Mol Cell Proteomics. 2023.22(9): 100613.
Dear-DIAXMBD: Deep Autoencoder Enables Deconvolution of Data-Independent Acquisition Proteomics
Qingzu He#, Chuan-Qi Zhong#, Xiang Li#, Huan Guo, Yiming Li, Mingxuan Gao, Rongshan Yu, Xianming Liu, Fangfei Zhang, Donghui Guo, Fangfu Ye, Tiannan Guo, Jianwei Shuai* and Jiahuai Han*
Research. 1 Jun 2023. DOI: 10.34133/research.0179
Proteome Landscapes of Human Hepatocellular Carcinoma and Intrahepatic Cholangiocarcinoma
Xiao Yi# , Jiang Zhu#, Wei Liu, Li Peng, Cong Lu, Ping Sun, Lingling Huang, Xiu Nie, Shiang Huang, Tiannan Guo* , Yi Zhu*
Mol Cell Proteomics. 20 June 2023. doi.org/10.1016/j.mcpro.2023.100604
Proteomics approaches to long COVID: status and outlooks
Xiao Liang*, Yingrui Wang, Tiannan Guo
Life Medicine, 19 June 2023. doi.org/10.1093/lifemedi/lnad023
Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets
Rui Sun#, Weigang Ge#, Yi Zhu#, Azin Sayad#, Augustin Luna, Mengge Lyu, Shuang Liang, Luis Tobalina, Vinodh N. Rajapakse, Chenhuan Yu, Huanhuan Zhang, Jie Fang, Fang Wu, Hui Xie, Julio Saez-Rodriguez, Huazhong Ying, William C. Reinhold, Chris Sander, Yves Pommier, Benjamin G. Neel*, Ruedi Aebersold*, Tiannan Guo*
Mol Cell Proteomics. 19 June 2023. doi.org/10.1016/j.mcpro.2023.100602
Integrative multi-omics deciphers the spatial characteristics of host-gut microbiota interactions in Crohn’s disease
Xiang Gao#, Ruicong Sun#, Na Jiao#, Xiao Liang#, Gengfeng Li, Han Gao, Xiaohan Wu, Muqing Yang, Chunqiu Chen, Xiaomin Sun, Liang Chen, Wei Wu, Yingzi Cong, Ruixin Zhu*, Tiannan Guo*, Zhanju Liu*
Cell Reports Medicine. 2023. 4: 101050.
An individualized protein-based prognostic model to stratify pediatric patients with papillary thyroid carcinoma
Zhihong Wang#, He Wang#, Yan Zhou#, Lu Li, Mengge Lyu, Chunlong Wu, Tianen He, Lingling Tan, Yi Zhu, Tiannan Guo, Hong-Kun Wu*, Hao Zhang*, Yaoting Sun*
Research Square. June 9, 2023. doi.org/10.21203/rs.3.rs-3015403/v1.
Mass Spectrometry-based Proteomics of Epithelial Ovarian Cancers: a Clinical Perspective
Liujia Qian, Rui Sun, Zhangzhi Xue, Tiannan Guo*
Mol Cell Proteomics. May 18 2023. doi: 10.1016/j.mcpro.2023.100578.
Multi-omics blood atlas reveals unique features of immune and platelet responses to SARS-CoV-2 Omicron breakthrough infection
Hong Wang#*, Cuicui Liu#, Xiaowei Xie#, Mingming Niu#, Yingrui Wang#, Xuelian Cheng#, Biao Zhang#, Dong Zhang, Mengyao Liu, Rui Sun, Yezi Ma, Shihui Ma, Huijun Wang, Guoqing Zhu, Yang Lu, Baiming Huang, Pei Su, Xiaoyuan Chen, Jingjing Zhao, Hongtao Wang, Long Shen, Lixia Fu, Qianqian Huang, Yang Yang, He Wang, Chunlong Wu, Weigang Ge, Chen Chen, Qianyu Huo, Qingping Wang, Ying Wang, Li Geng, Yan Xie, Yi Xie, Lijun Liu, Jianwei Qi, Huaiyong Chen, Junping Wu, Erlie Jiang, Wentiao Jiang, Ximo Wang*, Zhongyang Shen*, Tiannan Guo*, Jiaxi Zhou*, Ping Zhu*, Tao Cheng*
Immunity. 2023. 56(6): 1410-1428.e8.
USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities
Chao Liu#, Lingang Sun#, Yijun Tan, Qi Wang, Tao Luo, Chenlu Li, Nan Yao, Yuting Xie, Xiao Yi, Yi Zhu, Tiannan Guo, Junfeng Ji*
Science Advances. 2023. 9(20): eade3888.
An immunometabolism subtyping system identifies S100A9+ macrophage as an immune therapeutic target in colorectal cancer based on multiomics analysis
Xuanwen Bao#*, Danyang Wang#, Xiaomeng Dai#, Chuan Liu#, Hangyu Zhang, Yuzhi Jin, Zhou Tong, Bin Li, Chuchu Tong, Shan Xin, Xin Li, Yanfang Wang, Lulu Liu, Xudong Zhu, Qihan Fu, Yi Zheng, Jingwen Deng, Weihong Tian, Tiannan Guo, Peng Zhao, Wenbin Chen*, and Weijia Fang*
Cell Reports Medicine. 2023. 4(4): 100987.
Recent advances of data-independent acquisition mass spectrometry-based proteomics
Tiannan Guo*, Ruedi Aebersold
Proteomics. 2023.23(7-8): 1-3.
FOSL2 promotes intertumoral infiltration of T cells and increases pathological complete response rates in locally advanced rectal cancer patients
Kailun Xu#, Xiaoyang Yin#, Biting Zhou, Xi Zheng, Hao Wang, Jing Chen, Xue Cai, Huanhuan Gao, Xiaoming Xu, Liuhong Wang, Li Shen, Tiannan Guo, Shu Zheng*, Baosheng Li*, Yingkuan Shao*, Jian Wang*
Cancer Letters. 2023.562: 216145.
Resistance prediction in high-grade serous ovarian carcinoma with neoadjuvant chemotherapy using data-independent acquisition proteomics and an ovary-specific spectral library
Liujia Qian#, Jianqing Zhu#, Zhangzhi Xue#, Tingting Gong#, Nan Xiang, Liang Yue, Xue Cai, Wangang Gong, Junjian Wang, Rui Sun, Wenhao Jiang, Weigang Ge, He Wang, Zhiguo Zheng*, Qijun Wu*, Yi Zhu*, Tiannan Guo*
Molecular Oncology. February 28, 2023. doi.org/10.1002/1878-0261.134102023.
Genome-wide genotype-serum proteome mapping provides insights into the cross ancestry differences in cardiometabolic disease susceptibility
Fengzhe Xu#, Evan Yi-Wen Yu#, Xue Cai#, Liang Yue#, Li-peng Jing#, Xinxiu Liang#, Yuanqing Fu, Zelei Miao, Min Yang, Menglei Shuai, Wanglong Gou, Congmei Xiao, Zhangzhi Xue, Yuting Xie, Sainan Li, Sha Lu, Meiqi Shi, Xuhong Wang, Wensheng Hu, Claudia Langenberg, Jian Yang, Yu-ming Chen*, Tiannan Guo* & Ju-Sheng Zheng*
Nature Communications. 2023.14: 896.
High-Throughput and In-Depth Proteomic Profiling of 5 μL Plasma and Serum Using TMTpro 16-Plex
Yan Zhou#, Rui Sun, Sainan Li, Xiao Liang, Liujia Qian, Liang Yue, Tiannan Guo*
Methods Mol Biol. 2023.2628: 81-92.
Proteomics Investigation of Diverse Serological Patterns in COVID-19
Xiao Liang#, Rui Sun, Jing Wang, Kai Zhou, Jun Li, Shiyong Chen, Mengge Lyu, Sainan Li, Zhangzhi Xue, Yingqiu Shi, Yuting Xie, Qiushi Zhang, Xiao Yi, Juan Pan, Donglian Wang, Jiaqin Xu, Hongguo Zhu, Guangjun Zhu, Jiansheng Zhu, Yi Zhu, Yufen Zheng*, Bo Shen*, and Tiannan Guo*
Mol Cell Proteomics. 2023.22(2): 100493.
Diffuse midline glioma treated with epigenetic agent-based immunotherapy
Linkai Jing#, Zhihong Qian#, Qiang Gao#, Rui Sun, Zili Zhen, Guihuai Wang, Xuejun Yang, Haitao Li, Tiannan Guo & Wei Zhang*
Signal Transduction and Targeted Therapy. 2023. 8:23.
Longitudinal proteomic investigation of COVID-19 vaccination
Yingrui Wang#, Qianru Zhu#, Rui Sun#, Xiao Yi#, Lingling Huang, Yifan Hu, Weigang Ge, Huanhuan Gao, Xinfu Ye, Yu Song, Li Shao, Yantao Li, Jie Li*, Tiannan Guo*, Junping Shi*
Protein & Cell. February 6, 2023. doi.org/10.1093/procel/pwad004.
DPHL v2: An updated and comprehensive DIA pan-human assay library for quantifying more than 14,000 proteins
Zhangzhi Xue#, Tiansheng Zhu#, Fangfei Zhang, Cheng Zhang, Nan Xiang, Liujia Qian, Xiao Yi, Yaoting Sun, Wei Liu, Xue Cai, Linyan Wang, Xizhe Dai, Liang Yue, Lu Li, Thang V. Pham, Sander R.Piersma, Qi Xiao, Meng Luo, Cong Lu, Jiang Zhu, Yongfu Zhao, Guangzhi Wang, Junhong Xiao, Tong Liu, Zhiyu Liu, Yi He, Qijun Wu,Tingting Gong, Jianqin Zhu, Zhiguo Zheng, Juan Ye, Yan Li , Connie R.Jimenez*, Jun A*, Tiannan Guo*
Patterns. 5 July 2023. doi.org/10.1016/j.patter.2023.100792.
FAM3C in circulating tumor-derived extracellular vesicles promotes non-small cell lung cancer growth in secondary sites
Win Lwin Thuya#, Li Ren Kong#, Nicholas L. Syn#, Ling-Wen Ding#, Esther Sok Hwee Cheow, Regina Tong Xin Wong, Tingting Wang, Robby Miguel Wen-Jing Goh, Hongyan Song, Migara K. Jayasinghe, Minh TN Le, Jian Cheng Hu, Wei-Peng Yong, Soo-Chin Lee, Andrea Li-Ann Wong, Gautam Sethi, Huynh The Hung, Paul Chi-Lui Ho, Jean-Paul Thiery, Siu Kwan Sze, Tiannan Guo, Ross A. Soo, Henry Yang, Yaw Chyn Lim, Lingzhi Wang*, Boon-Cher Goh*
Theranostics. 2023.13(2): 621-638.
Cross-regulome profiling of RNA polymerases highlights the regulatory role of polymerase III on mRNA transcription by maintaining local chromatin architecture
Yongpeng Jiang#, Jie Huang#, Kai Tian, Xiao Yi, Haonan Zheng, Yi Zhu, Tiannan Guo and Xiong Ji*
Genome Biology. 2022. 23: 246.
Spatially resolved proteomics via tissue expansion
Lu Li#, Cuiji Sun#, Yaoting Sun#, Zhen Dong#, Runxin Wu, Xiaoting Sun, Hanbin Zhang, Wenhao Jiang, Yan Zhou, Xufeng Cen, Shang Cai, Hongguang Xia, Yi Zhu, Tiannan Guo* & Kiryl D. Piatkevich*
Nature Communications. 2022.13: 7242.
The 2022 Report on the Human Proteome from the HUPO Human Proteome Project
Gilbert S. Omenn*, Lydie Lane, Christopher M. Overall, Charles Pineau, Nicolle H. Packer, Ileana M. Cristea, Cecilia Lindskog, Susan T. Weintraub, Sandra Orchard, Michael H. A. Roehrl, Edouard Nice, Siqi Liu, Nuno Bandeira, Yu-Ju Chen, Tiannan Guo, Ruedi Aebersold, Robert L. Moritz, and Eric W. Deutsch
Journal of Proteome Research. Publication Date:November 1, 2022. doi.org/10.1021/acs.jproteome.2c00498
Integrated proteogenomic characterization of medullary thyroid carcinoma
Xiao Shi#, Yaoting Sun#, Cenkai Shen#, Yan Zhang#, Rongliang Shi#, Fan Zhang#, Tian Liao#, Guojun Lv, Zhengcai Zhu, Lianghe Jiao, Peng Li, Tiansheng Xu, Ning Qu, Naisi Huang, Jiaqian Hu, Tingting Zhang, Yanzi Gu, Guangqi Qin, Haixia Guan, Weilin Pu, Yuan Li, Xiang Geng, Yan Zhang, Tongzhen Chen, Shenglin Huang, Zhikang Zhang, Shuting Ge, Wu Wang, Weibo Xu, Pengcheng Yu, Zhongwu Lu, Yulong Wang, Liang Guo, Yu Wang*, Tiannan Guo*, Qinghai Ji* & Wenjun Wei*
Cell Discovery. 2022.8(1): 120.
Comparative Evaluation of Proteome Discoverer and FragPipe for the TMT-Based Proteome Quantification
Tianen He#, Youqi Liu#, Yan Zhou, Lu Li, He Wang, Shanjun Chen, Jinlong Gao, Wenhao Jiang, Yi Yu, Weigang Ge, Hui-Yin Chang, Ziquan Fan, Alexey I. Nesvizhskii*, Tiannan Guo*, and Yaoting Sun*
Journal of Proteome Research. 2022.21(12): 3007-3015.
A prediction model for COVID-19 liver dysfunction in patients with normal hepatic biochemical parameters
Jianfeng Bao#, Shourong Liu#, Xiao Liang#, Congcong Wang, Lili Cao, Zhaoyi Li, Furong Wei, Ai Fu, Yingqiu Shi, Bo Shen, Xiaoli Zhu, Yuge Zhao, Hong Liu, Liangbin Miao, Yi Wang, Shuang Liang, Linyan Wu, Jinsong Huang*, Tiannan Guo*, Fang Liu*
Life Science Alliance. 2022.19;6(1): e202201576.
COVIDpro: Database for mining protein dysregulation in patients with COVID-19
Fangfei Zhang, Augustin Luna, Tingting Tan, Yingdan Chen, Chris Sander, Tiannan Guo*.
Journal of Proteome Research. August 9, 2023. doi.org/10.1021/acs.jproteome.3c00092
Targeted protein degradation reveals RNA Pol II heterogeneity and functional diversity
Yuanjun Li#, Jie Huang#, Junyi Zhu, Lijun Bao, Hui Wang, Yongpeng Jiang, Kai Tian, Rui Wang, Haonan Zheng, Wenjia Duan, Weifeng Lai, Xiao Yi, Yi Zhu, Tiannan Guo, Xiong Ji*.
Molecular Cell. 2022.82(20): 3943-3959.e11.
Artificial intelligence defines protein-based classification of thyroid nodules
Yaoting Sun#, Sathiyamoorthy Selvarajan#, Zelin Zang#, Wei Liu#, Yi Zhu#, Hao Zhang#, Wanyuan Chen, Hao Chen, Lu Li, Xue Cai, Huanhuan Gao, Zhicheng Wu, Yongfu Zhao, Lirong Chen, Xiaodong Teng, Sangeeta Mantoo, Tony Kiat-Hon Lim, Bhuvaneswari Hariraman, Serene Yeow, Syed Muhammad Fahmy bin Syed Abdillah, Sze Sing Lee, Guan Ruan, Qiushi Zhang, Tiansheng Zhu, Yifan Hu, Zhen Dong, Weigang Ge, Qi Xiao, Weibin Wang, Guangzhi Wang, Junhong Xiao, Yi He, Zhihong Wang, Wei Sun, Yuan Qin, Jiang Zhu, Xu Zheng, Linyan Wang, Xi Zheng, Kailun Xu, Yingkuan Shao, Shu Zheng, Kexin Liu, Ruedi Aebersold, Haixia Guan, Xiaohong Wu, Dingcun Luo, Wen Tian, Stan Z. Li*, Oi Lian Kon*, N. Gopalakrishna Iyer*, Tiannan Guo*.
Cell Discovery. 2022.8(1): 85.
Tissue-characteristic Expression of Mouse Proteome
Tian Lu, Liujia Qian, Yuting Xie, Qiushi Zhang, Wei Liu, Weigang Ge, Yi Zhu *, Lijia Ma *, Cheng Zhang *, Tiannan Guo *.
Molecular & Cellular Proteomics. 2022.21(10): 100408.
Integration of protein context improves protein-based COVID-19 patient stratification
Jinlong Gao#, Jiale He#, Fangfei Zhang#, Qi Xiao, Xue Cai, Xiao Yi, Siqi Zheng, Ying Zhang, Donglian Wang, Guangjun Zhu, Jing Wang, Bo Shen, Markus Ralser, Tiannan Guo*, Yi Zhu*.
Clinical Proteomics. 2022.19(1): 31.