Tutorials

Combined proximity labeling and affinity purification−mass spectrometry workflow for mapping and visualizing protein interaction networks

Overview on modern approaches to speed up protein identification workflows relying on enzymatic cleavage and mass spectrometry-based techniques

Data-Independent Acquisition for the Orbitrap Q Exactive HF: A Tutorial

Phosphopeptide enrichment for phosphoproteomic analysis – A tutorial and review of novel materials

Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation

Why Batch Effects Matter in Omics Data, and How to Avoid Them

Diagnostics and correction of batch effects in large-scale proteomic studies: a tutorial

Metaproteomics boosted up by untargeted data-independent acquisition data analysis framework

Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis

A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane

iMetaLab 1.0: a web platform for metaproteomics data analysis

Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial

TestDeep learning for biology