Selected publications

The five most recent selected publications. Search the full record by title, author, journal, year or DOI.

Showing the 5 most recent of 36 selected publications. Search to explore the rest.

2026

An operational perturbation proteomics-based virtual cell model

Nature. 2026 Sep 9. doi: 10.1038/s41586-026-11001-9. Epub ahead of print. PMID: 42717098.

Authors & attribution

Rui Sun#, Liujia Qian#, Yongge Li#, Tong Liu#, Honghan Cheng, Xuedong Zhang, Xueya Zhou, Yuecheng Zhan, Guangmei Zhang, Zhengchao Lou, Kunpeng Ma, Chunlong Wu, Dongchen Ji, Zhangzhi Xue, Hongxue Meng, Yuhang Xiang, Dingwei Lei, Qianhe Zhou, Wenbin Hu, Yuhan Deng, Lingling Tan, Qi Xiao, Zhiwei Liu, Lei Zeng, Liqin Qian, Xuan Zheng, Qiong Hu, Nianzi Luo, Weinan E, Peijie Zhou*, Han Wen*, Yi Zhu*, Tiannan Guo*.

2026

AI proteomics: from protein identification to virtual cells

Nature Methods. 2026 Jul 28. doi: 10.1038/s41592-026-03085-y. Epub ahead of print. PMID: 42521824.

Authors & attribution

Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Perez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R. Krieger, Jianhua Yao, Wen Han, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Chao Liu, Nan Li, Zhongzhi Luan, Jiangning Song, Kaicheng Yu, Wanggen Wan, Tai Wang, Kang Zhang, Le Zhang, Peter A. Bell, Matthias Mann*, Bing Zhang*, Tiannan Guo*.

2026

Toward the construction of a virtual yeast

Nature. 2026 Jul;655(8121):59-70. doi: 10.1038/s41586-026-10574-9. Epub 2026 Jul 1. PMID: 42387167.

Authors & attribution

Liujia Qian, Zizhuo Zhou, Peijie Zhou, Zhen Dong, Xudong Zhang, Zhenwu Dai, Zhangyang Gao, Siqi Sun, Kevin R. Roy, Shuaiyao Wang, Nicola Zamboni, Charles Boone, Michael Costanzo, Jianzhe Li, Gianni Liti, Jia-Xing Yue, Markus Ralser, Evan Williams, Mattia Zampieri, Heng Jiang, Tailin Wu, Yalin Wang, Feiran Li, Joseph Schacherer, Rui Sun, Zhaoxing Li, Yaming Deng, Yi Chen, Zhiping Xie, Huiqiang Lou, Xiaowen Wang, Linhai Xie, Han Wen, Liangyi Chen, Kai Lei, George Rosenberger, Xue Cai, Yingrui Wang, Qi Xiao, Huaizong Shen, Gaowen Liu, Lei Ma, Brenda Andrews, Hui Lu, Kiryl Piatkevich, Yi Zhu, Lei Bai, Yizhi Cai, Yuping Chen, Weinan E, Ge Gao, Fuchu He, Luonan Chen, Stan Z. Li, Hongwu Ma, Liang Qiao, Lars M. Steinmetz, Leihan Tang, Tang Tang, Xiaofan Zhang, Jing Yang, Yifan Yang, Kaicheng Yu, Jianyang Zeng, Yefeng Zheng, Bowen Zhou, Tiannan Guo*.

2026

Spatial distribution of the proteome in the human body and in cancers

Nature. 2026 Aug;656(8126):227-236. doi: 10.1038/s41586-026-10660-y. Epub 2026 Jun 17. PMID: 42310461; PMCID: PMC13442039.

Authors & attribution

Liang Yue#, Wenhao Jiang#, Sainan Li#, Meng Luo#, Ning Fan, Xiaolu Zhan, Rui Sun, Honghan Cheng, Zhangzhi Xue, Tong Liu, Qianhe Zhou, Kexin Chen, Tian Lu, Fang Guo, Dongwei Li,Weigang Ge, Zongxiang Nie, Mengge Lyu, Jun A, Yingrui Wang, Yingdan Chen, Zhenhai Fu, Nan Xiang, Lu Li, Fengchao Yu, Guo Ci Teo, Alexey I Nesvizhskii, Meng Wang, Michael P. Snyder, Ben C. Collins, Qi Xiao, Ruedi Aebersold, Fei Xu, Hui Yang, Sijia Zhang, Yi Han, Yi Zhu*, Yong Ji*, Yan Li*, Tiannan Guo*.

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