Download

1. MSDT Files (MassNet database)

The MSDT files are available here:

2. XuanjiNovo

Code and pretrained models for XuanjiNovo are available at: https://github.com/guomics-lab/MassNet-DDA

Pre-built containerized environments for CUDA 11 and CUDA 12 at https://hub.docker.com/r/guomics2017/massnet-dda

3. Supporting Datasets and Code for Downstream Applications

Details of the MassNet database search workflow, as well as the datasets and code for retention time prediction and PSM rescoring, are available at: https://zenodo.org/records/17538551

4. MSDT-converter

A tool for converting common MS formats, including mzML, Bruker's native .d format, and MGF, into the MSDT format. The source code is available at: https://github.com/guomics-lab/MSDT-Converter.

A pre-built Docker image is also available at: https://hub.docker.com/r/guomics2017/msdt-converter

5. Reference

If you use MassNet or XuanjiNovo in your research, please cite the following preprint: https://www.biorxiv.org/content/10.1101/2025.06.20.660691v1