metaExpertPro is a computational software for the analysis of DDA-MS and DIA-MS hybrid-based metaproteomic data. It provides a complete pipeline for peptide and protein measurement, functional and taxonomic annotation, and generation of quantitative matrices for both microbiota and hosts. It is compatible with DDA-MS and DIA-MS data from Thermo Fisher Orbitrap ( .mzML format) or Bruker (.d format) mass spectrometers.

This software is currently under development, and we welcome you to try it out. If you have any feedback or suggestions, please let us know.
Email address: sunyingying@westlake.edu.cn; guotiannan@westlake.edu.cn.
You can also create an issue on the GitHub page:https://github.com/guomics-lab/metaExpertPro