Download

DIA-BERT Source Data and Zenodo files:

The DIA-BERT Source Data and Zenodo files can be downloaded from https://zenodo.org/records/15132009

Source Data.xlsx includes the raw data for all figures from the main manuscript and Supplementary Information. The data is organized by each figure in separate sheets within the Excel file.

Files.zip contains five seperate Excels:

File Name: File 1

Description: Comparison summary of identification between DIA-NN and DIA-BERT

File Name: File 2

Description: Identified peptide precursors and proteins using DIA-NN (in library-based mode) and DIA-BERT

File Name: File 3

Description: Parameters for simulated data by modified Synthedia

File Name: File 4

Description: Quantification of peptide precursors and proteins using DIA-NN (in library-based mode) and DIA-BERT in combined search

File Name: File 5

Description: Comparison of quantification performance on the three-species dataset using DIA-BERT with different quantification models and DIA-NN.

Manual:

The manual of DIA-BERT software, available in either one of these links:

Excutable software:

The DIA-BERT executable file can be downloaded from one of these sources:

Demo data:

Access the DIA-BERT demo data through any of these links: